You're basically faulting him for taking a position which was reasonable and well within the center of public opinion at the time, which had subsequently become unpopular. And completely discounting the statement he made in the meantime showing that his opinions had, in fact, evolved over time, just as it had for a large fraction of the population.
(Another thing to point out is that the board was aware of the political contribution when he was appointed CEO, and did not feel it was any obstacle.)
And one board member did resign over this prior to his appointment.
For us here in NL (where 90%+ of the population supports gay marriage) the whole idea that this is even worth arguing over seems strange, about as strange as coming out pro-slavery would be.
https://news.ycombinator.com/item?id=10654651 has more on the story you are misrepresenting even on its own terms.
I could have worded that comment a lot better but the intention seems pretty clear to me: Your actions as a CEO (even past actions) are going to be viewed in a different light than your actions as just another employee, even a co-founder, and what wasn't a problem before the CEO nomination quickly became a real problem, both for Mozilla the progressive entity as well as for Eich himself. Whether the donations were made several years, months or weeks before his tenure as CEO are not important.
The one thing I did get completely wrong - and which I will also acknowledge - is that I thought Eich could have legally made those donations anonymously (it was argued quite strongly during that time that this should be a possibility). I did not realize that this was illegal.
Sometimes the best response to a rebuttal is just "TIL".
Good faith doesn't mean "be very afraid to criticize others when they lie".
Also, and this is just a general observation, whether Eich would have been a good CEO or not is a complete unknown.