They did diffusion tensor imaging. What this does, using MRI, is determine the local anisotropy of water flow in each voxel. You assume that this anisotropy aligns with with the axis of axons, since they limit the diffusion of water across their axis (water diffuses along them). You can then use the principal directions of the diffusion tensor to estimate in what direction the water, i.e. the axons are "flowing" giving you an approximate picture of how axons connect different parts of the brain.