The reason prices aren't high is that nobody wants to live in an old house. "Old" being 15 years old or more. Even with renting apartments, if it's older than 7-8 years old, agents will almost warn you that the property isn't exactly fresh and sparkling, but it's still not bad. If it's a pre-90s house, it's considered basically unwanted and they'll all but try to give it away. Meanwhile, 90s homes in the US are still marketed as pretty new, and demand seems to be higher for older homes than newer ones. America also has loads of empty houses. It also has loads of property owners who refuse to lower prices because their ego is worth more than their property. Apparently about 1/8 American homes are currently vacant, and the population isn't declining. Price and desirability are the problems.
Japan, is also no stranger to real estate bubbles, having experienced perhaps the worst real estate bubble in modern history in the 90s:
https://www.investopedia.com/articles/economics/08/japan-199...
"At their peak, prices in central Tokyo were such that the Tokyo Imperial Palace grounds were estimated to be worth more than all the land in the entire state of California."
Japan has a declining population, which means that rural housing actually can have zero buyers for it, where the population is lower than the number of houses. One in seven buildings in Japan is actually vacant [0].
If their population was increasing faster than housing construction, then housing would actually increase in cost.
[0] https://www.bloomberg.com/news/articles/2019-04-29/japan-s-s...