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Re:Ontology for the life sciences: genes, proteins, diseases... by haddr on Monday January 20, 2020 @04:48PM (#22102348)
Jena API was quite common to use with Java, and RDFLib for python.
Re:Ontology for the life sciences: genes, proteins, diseases... by rzzzt on Monday January 20, 2020 @05:57PM (#22102766)
OWL API is also a contender in the Java libraries category: https://github.com/owlcs/owlapi