Should a professional accountant keep copies of all the tax returns they prepared, on a flash drive that’s with them at all times, in case a client gets audited? Should I keep a copy of every line of code I ever wrote? Where does this professional responsibility end for you?
Accountants are required by law to maintain a minimum of seven years' worth of records for exactly that reason.
Fundamentally, if you want to sell a book you've written, no one is going to care more than you. That means that if you're a small, unsupported author (the vast majority of cases), it's on you to take care of the annoyances that come along for the ride. That's the nature of work. That flagging can be used as a form or harassment is a genuine problem- this is an inevitable side-effect of systems designed for pure automation, without a human in the loop to provide feedback. Over-reliance on automation is an issue that goes far beyond the world of publishing. That is orthogonal to the issue of being responsible for one's own creation, in terms of having needed resources on-hand.
I mean, fundamentally, if you're saying your book needs to be on sale 24/7/365 then you need to be standing behind it 24/7/365 or paying a person or organisation to do that for you. If you want to take a break from the business of your book you should be prepared for Amazon to do the same.