The problem again (in my very speculative opinion) is that you have a very limited set of vendors who have a complete lock down on their hardware.
Imagine a world without gcc or llvm and only Intel or AMD could provide you with a compiler. Imagine also that they would provide you with this compiler for free, such that their business model was entirely based on them selling their CPU's. How much pressure would they have in providing a high quality toolchain?
It's not like their customers are gonna run away to a non existent competition they still need to buy CPU's and they would be stuck with their 'barely works' toolchain.
You can see the difference if you compare FPGA vendor software with HDL simulation software. Simulators are in the business of selling you software so they have pressure to actually deliver quality software. FPGA vendors are in the business of selling _silicon_ (@saagarjha) so they pretty much see the toolchain as an operational cost.
There is an ugly feedback loop here. HDL tools interact poorly with version control -> it is difficult to collaborate using those tools -> HDL engineers would rather silo up than fight the tools -> no pressure to improve tools' support for version control.