Are you sure about that? The most recent source of that article is from 2000. Half of the stuff I have mentioned didn’t exist back then.
As far as I’m aware, there’re very few people in academia who study modern hardware while focused on software performance. I only know about Agner Fog, from technical university of Denmark.
Agner Fog does some cool stuff (and I've used his RNG libraries many times) but as you said he studies modern hardware with a focus on software performance. Algorithm engineering is about finding algorithms that have nice theoretical guarantees (e.g., proving correctness or that there aren't any inputs which would result in substantially worse running time) while keeping in mind that the result would be quite useless if it couldn't be implemented efficiently on the machines we have, so the goal is to come up with algorithms that are also really fast in practice.
I guess this is where I pitch what we call "Algorithm Engineering", which considers both theoretical guarantees and practical performance, including properties of real-world hardware such as the ones you mentioned :) https://en.wikipedia.org/wiki/Algorithm_engineering