I'm often able to mystify people by fixing something by dropping to a shell and modifying files.. even some developers. I think the one thing that this article points out is how unaware some developers about what they're doing. The author had an example where he used NPM to download dependencies and said "websites were made of files; now they are made of dependencies." While that is not wrong, its too often how people think, and they forget that the dependencies are actually just a bunch of files.

I actually end up helping tons of random people in my company use conda, because they can't get the concept of virtual envs. They don't understand that the libraries are actually files on the disk, and your virtual environment is just a directory and some variables.

That's not to say all developers are like this, but I think the numbers that think like this are growing. Ultimately, I'm like you - they can pry the files from my cold dead hands, if I didn't know what/where/how files were used, I wouldn't fundamentally understand how a lot of different technologies even work.