Other languages, such as Python, were not designed specifically with web apps in mind. So a web developer using such a language must make sure he's doing all the web-specific stuff properly. Which is tedious and error-prone, and that's one reason why nobody should use Python on the web without a decent framework.
Your last sentence =~ s/Python/any language/
Even PHP is horrible and insecure to use without a framework today.
I'm actually curious about a recent feature addition, in 5.3.4:
"Paths with NULL in them (foo\0bar.txt) are now considered as invalid. (Rasmus)"
If that's really the case, it seems like Rasmus has eliminated a large swath of null byte vulnerabilities in PHP applications (at least those null byte vulnerabilities involving the filesystem, which are the kind I'm used to seeing). I've been meaning to compile 5.3.3 and 5.3.4 locally to test out the different behaviors.
Yes -- this specific change mitigates a lot of simple local file inclusion vulnerabilities. It's not a cure-all, but it does at least prevent many common antipatterns (e.g, include("languages/$_COOKIE['lang'].php")) from being trivially exploited.