The net result is that a good subway system in Kyoto can serve a majority of the metro population, while that is not true for Philadelphia or Atlanta. (That is true even though Kyoto is not particularly dense--closer in Atlanta to density than to Philadelphia.)
But let's look at Boston instead. Population 700,000 in the city limits; 4.8 million in the metro area, so about one seventh lives in the city proper.
http://www.rochestersubway.com/images/photos/boston_subway_m...
While perhaps not as developed as Kyoto, that's still a very healthy rail system. And its first subway was built in 1897 when it had a population of just about half a million.
The metro area in which Kyoto is located is around 20 million people. The metro area of Boston is almost 5 million people, you say. These are not counterexamples to what I was trying to communicate. I don't really think my comment was as hard to understand as you make it seem.
Population of Kyoto: 1.47 million
Kyoto subway map:
https://youinjapan.net/maps/kyoto/kyoto_metro_train_map.png
I didn't cherry pick this from some ordered list of cities by train lines to population ratio; I just picked it because I lived there and the train was as incredibly convenient as it looked. And also gorgeous:
https://ja.m.wikipedia.org/wiki/%E4%BA%AC%E9%98%AA3000%E7%B3...