Consider that your brain already has to do this anyway even with all-natural eyes. It receives an independent image from each separate eye, so it has to line the two images up with each other in order to produce binocular vision. It's not as if your eyes come pre-calibrated or something, and even if they did, your skull grows throughout your life, so the alignment of eyes relative to each other must change over time, requiring your brain to gradually recalibrate. So it makes sense that the brain would be able to recalibrate to an artificial change in your vision as well.