So, I implemented exactly the solution you describe here. I made my interpreter run as a daemon and listen for requests on a Unix domain socket (with a custom binary protocol). I then wrote a client in C, which opened that Unix domain socket and sent it a script to run. The C program also redirected stdin/stdout/stderr to/from the interpreter through the Unix domain socket, if connected to a tty it could switch to/from raw mode, it notified the server if certain signals occurred, etc. Using the interpreter this way, startup time was a lot faster. This approach can be applied to any language which supports runtime evaluation of code.
The issue with missing-normal-capability processes is more difficult to address. One possibility, at least on Linux, would be to get the pid from SCM_CREDENTIALS message, and then read /proc/$PID/status to check capability bits. It could default to denying access to processes with less capabilities than it itself has.
(SCM_SECURITY can be used to pass the SELinux security label from client to server, which could also be used as a security measure; maybe the server could refuse access to processes running with a different label, or have a whitelist of allowed labels; if SELinux is being used to sandbox a process, that would prevent it from accessing the background interpreter unless that was explicitly allowed by whitelisting.)