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Re:PyPI now offers two-factor auth by robgolding on Thursday May 30, 2019 @03:23PM (#20054979)
1Password for Mac allows you to do this also.
Re:PyPI now offers two-factor auth by rxdazn on Thursday May 30, 2019 @04:25PM (#20055547)
https://support.1password.com/one-time-passwords/

The desktop app will let you scan QR codes that appear on screen. When 2FA fields show up, the password autofill shortcut (cmd + \ is the default I think) will automatically populate them.