The latest Soyuz capsules still have an extensive set of manual displays and controls for the cosmonauts to use when necessary. The point is not to hand fly the spacecraft during re-entry, but rather to deal with system failures or unexpected situations which the autopilot can't handle.
This is untrue for Soyuz or Dragon 2 - any capsule design is not pilotable. It will also be untrue for the upcoming starship for example. It might have crew but I struggle to think why it would have a pilot.
Falcon 9 is just another unmanned booster.
Which just so happens to land itself.
The point I'm trying to make is that machines can land themselves perfectly well nowadays, and control software and its interaction with hardware is now too complex for puny humans to understand or interact with, so they're better off just letting it do its thing and land or crash - a human interaction during landing is not going to save the machine - things have moved on from the mooon landings.