Repealing the second amendment does not mean banning firearms altogether. Writing a new amendment with better scope might be an option, or relying on congress to enact sensible limits might also be an option. But I do agree with you that such an amendment would be received as "[the left] wants to take our guns." That's the challenge of politics: you have to meet that criticism head-on and be clear about what sort of policies would get changed. This is no different from debating critics of socialized medicine who quickly throw up their hands and say "Death Panels!"
[1] https://www.nytimes.com/2018/03/27/opinion/john-paul-stevens...
I know that the slightest thing gets misconstrued by the other side (regardless of what side) but you don't have to serve it to them on a silver platter!
On the flip side, I've seen an op-ed in NYT or Washington Post (I don't recall) calling for the repeal of the second amendment - and I can't imagine how incredibly stupid the person making that must be. It will never happen and yet it plays exactly into the "Obama wants to take our guns"-type arguments. Of course, that author isn't actually stupid, they just aren't motivated by gun control legislation but rather by getting themselves attention.
[1] https://www.nytimes.com/2018/08/22/us/politics/betsy-devos-g...