I don't understand what you are asking for here.
Emscriptem doesn't generate C/C++ code, it generates Javascript, which then runs on top of a Javascript execution environment (V8 etc).
The real comparison would be some C/C++ code run though this and running in Javascript vs handwritten Javascript.
(It's possible what you mean is a comparison of the generated machine code from LLVM vs that from the Javascript engine. I agree that would be interesting, but I think you'd be better off comparing the machine code generated by a Javascript-on-LLVM implementation such as http://github.com/omo/jsllc vs that generated by a conventional Javascript runtime.)
FWIW, the author did somewhat touch on the issue of performance at the end of the article: Of course speed is an issue here. Emscriptened benchmarks currently run at about 1/20th the speed of gcc -O0 run on the original C++. and goes on to explain where the performance loss comes from.
It'd be interesting to see how decent performance can get between the LLVM optimizations and the tracing/JIT of the newer JS engines.