However, the statement being objected to was under the section about the 3rd level of abstraction: "The Embedded HAL to the Rescue", which is detailing an extra semantic restriction imposed by Rust. The final two sentences of section 2 even allude to the prevented actions being legal but almost certainly being a logic error. To object that the hardware allows nonsensical actions without trapping is to miss the point of section 3 of the article. At the third level of abstraction: Rust prevents something legal but nonsensical.
Now, if this particular board doesn't clear output state when switching a GPIO pin from input to output, then it's a valid criticism that perhaps the developer wants to set the output state correctly before driving the pin and the prevented action is in fact semantically meaningful and perhaps the intent of the developer. However, that wasn't the OP's objection. The OP's objection was simply that Rust was preventing something that the underlying platform allows.
To recap: The article said "Rust doesn't allow you to do X" The OP said "Wrong!!!! The mocrocontoller totally allows you to do X" I pointed out that the article never said the microcontroller doesn't allow X.