As the sibling says, org-mode easily delivers here. In ways that makes standard notebook environments somewhat frustrating with their limitations.

Examples:

You can reference data in a table of your page.

You can access the "session" of a code block in a repl. Useful for putting credentials or other sensitive data in.

You can copy from in a result or a code block with the same ease.

Any tags you have setup will jump as expected. Same for completions and documentation.

Arguably, the way images are referenced externally is better for post processing.

Finally, being able to source control the document easily is huge. Json is a terrible format. :(