The 2nd team is arguing the presence of residual correlations after the signal is removed means the total correlation isn't well described by a gravity wave signature.
This is experimental data, so there's clearly going to be noise and there's clearly going to be complexities in the detector response to the event. The question boils down to whether the residuals are significant enough and distinct enough from expected detector response behaviors to call the detection into question or suggest something unexpected is contained inside the detected signal.
There are specific signal shapes/characteristics that would be producable by a gravitational wave. Anything that doesn't match that shape/doesn't have those characteristics by definition isn't from a gravity wave. Ignoring those characteristics and just saying "if it's correlated it's from a gravity wave" would be a highly incorrect way to analyze the data, which is why none of the scientists in the debate would advocate doing that.
This discussion would then simply be about how well the combined signal matches a gravitational wave, which seems a lot more sensible.
This sort of thing is much more about statistics and error propagation than one encounters in more traditional signal processing.