As tptacek points out elsewhere, if this is a concern for you, just use SHA-512/256. It's just as misuse-resistant, practically guaranteed to be in any library that would bother to implement SHA-3, faster by a mile, and has been the target of significantly more cryptanalysis.
There are zero practical reasons to choose SHA-3.
I'm not rooting for SHA-3; I'm just saying that it's wrong to dismiss length extension attacks only because they're commonly effective agains misuses of hash functions.