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Re:Twitter allegedly deleting negative tweets about United A... by mrdrozdov on Tuesday April 11, 2017 @02:36PM (#14091052)
From TNW. Seems relevant:

Update 2, April 11, 11:15ET: Some readers have suggested that the allegedly deleted tweets might have initially appeared as replies to now-deleted tweets, which would explain why they are missing. However, numerous users contacted by TNW rejected this premise, claiming the missing posts were standard tweets.

Re:Twitter allegedly deleting negative tweets about United A... by snowwrestler on Tuesday April 11, 2017 @06:40PM (#14093170)
TBF it's harder to tell when your tweet is being posted as a reply than it used to be, because of the changes in the Twitter mobile app UI for replies. Since the change I have accidentally posted tweets as replies a couple times.