Turkey was well underway to becoming a very modern state, Iran ditto. All this long before we began propping up the Shah and destabilizing the region around Turkey. The meddling began roughly around the time oil became important and really took off after World War II, in part accelerated because of the cold war.
Yes, Islamic fundamentalism is the anomaly, and it would not nearly be as powerful as it is without the CIA and the Saudi's funding and arming their initial round.
Let's just use this as an example, from the website you linked to above: http://4.bp.blogspot.com/-yOvi_Hupn0M/VA34gNyV1DI/AAAAAAAA8R...
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Do you think that kind of thing was "normal" for the Islamic middle east?
Turkey was well underway to becoming a very modern state
The temporary modernization of Turkey was a result of having rulers and elites who looked to the west to copy their success. It was absolutely not a result of a popular movement. Modernization was not supported by the bulk of the population at any point in time.