Nevermind that outside of political circles and people who take The Internet way too seriously, Pepe is just a stupid meme that has transformed from "Sad Frog" to "Woznak's friend" to "Betrayer of Woznak" to "Smug Frog/Pepe" to "Rare Pepe". And due to its prevalence in Chan Culture became a stupid meme to tell Channers from Normies (REEEEEEE) with the red Pepe with the wavy tongue. Honestly that meme has transformed quite a bit over the years.
I'm convinced anyone who thinks Pepe is a symbol of the alt-right has no idea that The Internet has its own cultures and subcultures. It just so happens that 4chan and /r/The_Donald have a huge cross-section of users. No surprise that many 4chan memes are prominent there.
The worst defense I've seen are images of Pepe shopped to be Hitler/a Nazi. FFS, you can find the same for Mickey Mouse and Hello Kitty - or nearly anything actually. Shopping something into Hitler is common.
Makes me think if /r/The_Donald chose a Gay Pride or LGBT Flag as their "official flag" if it would cause people to second guess if someone supports LGBT or is an alt-right neo-nazi sympathizer. Talk about extremism.
E:
Just noticed your name and I feel you weren't asking your question seriously, but have a serious answer anyway, Mr. Jimmy Rustles
The moment that Hillary went nuclear with the stupid, harmless frog was the moment that I questioned the things "progressive" people label people who don't agree with them. As silly as it was, it was truly the turning point of me re-examining what I read and listen to with a more skeptical approach.
Thanks for the answer - it really unrustled my jimmies.