If I have a choice, I'm always choosing native application for macOS. It's eating less memory (because all shared libraries are already loaded), it provides similar experience as other apps (menu bar, context menu), it's usually works much faster (because Objective C is quite fast compared to some interpreted languages). Sometimes I don't have a choice (like Intellij Idea), so I have to live with Java or Chromium application, but I don't like that experience.