First, part tolerances are not a particularly important issue with engineering of high vacuum systems (sealing is effected by compression of gaskets, usually soft stainless steel gaskets for UHV systems).
Secondly, the difficulties in maintaining a large UHV system is usually related to "outgassing", from multiple surfaces and/or material imperfections, and are rarely due to "a single flaw in one part".
Thirdly, you are using the word "exponentially" wrong, even in the context of your flawed claim which is addressed below.
Finally: "the force on the pipe" is not, in a meaningful sense, proportional to the square of the radius. The forces in the pipe wall are proportional directly to the radius (formula is stress=pressure*radius/thickness), if it was otherwise pipe thickness would grow as the square of diameter and large pressurised pipes would be physically impossible.
Happy to do the math for you when you need it, best to leave it to the experts.
I doubt UHV experience is relevant here though - at 100 torr you can probably get away with simple o-ring seals. And outgassing doesn't matter: even isopropanol has a vapor pressure of only 40 torr.
Edit: The hyperloop design is at ~1 torr, not 100. Still, I'd imagine outgassing is not a huge issue.
The Alaska Pipeline is certified to operate at 1,180 psi.
It's not a problem, and minor leaks are not a problem, either. A leak that would stop a particle accelerator dead in its tracks will just make a hyperloop operate at slightly lower efficiency. Plus you can always just run the pump (any practical design will doubtless have the pumps running continously to make up for leakage, just as many ships and buildings have continuously-running bilge and sump pumps).