Bosses must make sure that they're not all critic with no praise. No one wants to be critiqued all the time without kudos for the good portions and hard work. Tone, body languages, and timing all play into how an effective leader communicates positively or negatively to a team member.
On the flip side, staff need to be able to separate their personal worth from the work that they do. This can be especially tough in some fields and with some personality types such as art, design, and programming. When your work is highly subjective, when you're starting your career, or when their are a million methods to achieve the same goal (with some methods being better without obvious reason as to why), it can feel like critiques are attacking the person instead improving the work.
An anecdote from my personal life: I worked as a paralegal for a while. I started off mediocre at the job, but after a management change, my new boss had manuals that gave standardized instructions on how to do nearly everything. That's when I started to excel. There were many specific times when I would give my boss documents, but he never let them slide. Ever. He would say, "The language and structure of this document is perfect, but you know I can't let anything slide without having something to change." He'd mark something subjective such as substituting a synonym with the same meaning and tone or moving a sentence that didn't affect the language of the paragraph. It never bothered me, but I can see how that would definitely grate on others. In spite of this, he was always full of praise with nothing but positive remarks.
::Shakes fist:: lawyers! ;-)
The article is referring to things that are ostensibly subjective changes that don't make a tangible, measurable difference. The suggestions in question are often the boss putting their mark on something so demonstrate that they've made an impact.
Even if the suggestion actually improves the product, suggesting something that deflates team morale more than it brings to the design means the change isn't worth it. As a boss that's quite a hard lesson to learn because logic says you should be doing whatever you can to ship the best possible product. In reality, especially in the long term, the product is going to be better if you temper your suggestions in favour of the team.