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Re:American Gut Project – Open-source human microbiome analysis by Govannon on Monday May 09, 2016 @11:57AM (#11660790)
They quantify the difference in samples here:

                    HMP  GG  PGP AGP
     Total Samples 4,788 531 683 4,658
http://americangut.org/wp-content/uploads/2016/02/mod1_main....

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