You're saying that should justify the FBI going to all the FedEx hubs and opening all the packages to check for various illegal stuff?
Unlike UPS and FedEx, Tor makes this straightforward, and also tries to avoid knowing the identities of people who are sending things via their service. So the police don't have that option.
(Note that the above is simply a description of what Tor is currently doing, as I understand it, and not an attempt to make a moral judgment one way or the other as to what Tor should be doing.)
I suspect that package services are used with high frequency by criminals without these constraints, e.g. the ones committing mail fraud. The police deal with this not by searching the contents of random packages but by arresting the actual perpetrators regardless of what they use for a delivery service.
There seems to be a common impression that if the police can't find you using one specific investigative method then they have to give up and go home. There are hundreds of different ways to catch criminals. Most of the ones people complain about the police losing are ones they never traditionally had to begin with.
It seems to me that it would be patently unreasonable to raid the FedEx employee's home, but it would be perfectly reasonable to hold FedEx the company responsible for not delivering such things. If it happened once, sure, raiding them is excessive. But if the government knew that FedEx, by design, actively did not care what they were delivering and made it hard for themselves to figure that out until it's loaded onto a truck for local delivery, and they had evidence that some drugs or weapons were being delivered, then sure, raiding the local FedEx distribution center and searching it seems within the realm of reasonable actions. Seizing all packages at that distribution center would be unreasonable, but the analog (seizing the computers) didn't happen.