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Re:LLVM 3.8 Release Notes by jibsen on Thursday March 10, 2016 @02:32PM (#11261566)
It seems that the target option might be the one I was looking for.

The installed version defaults to x86_64-pc-windows-msvc, where the msvc at the end suggests it is looking for MSVC headers.

If you specify x86_64-w64-mingw32 as target, it uses the mingw-w64 headers.

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