Bayesian Logic Programming

Re:Bayesian Logic Programming by alkalait on Friday December 18, 2015 @04:22AM (#10757518)

I'm a bit familiar with PyMC, but all it seems to do is Gibbs sampling, which mixes horribly compared to HMC.

How easy would the transition to PyStan be?

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Re:Bayesian Logic Programming by ced on Friday December 18, 2015 @09:25AM (#10758562)

Not trivial, but there's a Python wrapper available:

https://github.com/stan-dev/pystan

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Re:Bayesian Logic Programming by data_scientist on Friday December 18, 2015 @08:11AM (#10758221)

PyMC 3 implements HMC. It is still in beta but quite stable

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Re:Bayesian Logic Programming by twiecki on Friday December 18, 2015 @09:28AM (#10758583)

If you're interested: http://pymc-devs.github.io/pymc3/

PyMC3 uses Theano to create a compute graph of the model which then gets compiled to C. Moreover, it gives us the gradient for free so that HMC and NUTS can be used which work models of high complexity.

I use it in production, despite it still being beta. We're close to the first stable release but there are still some small kinks to figure out.

Disclaimer: I'm a co-developer.

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Re:Bayesian Logic Programming by rfergie on Friday December 18, 2015 @05:53AM (#10757824)

Probably pretty easy.

It is different, but the core semantics are the same so you just have to worry about new syntax (and worse python integration)

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