I actually prefer writing by pen. It's more fluid. And since things can't be easily rewritten, you give a bit of thought before you commit something, and are always driven forward.
Knuth et al. notes, in an article on technical writing (http://tex.loria.fr/typographie/mathwriting.pdf):
"Towards the end of the editing process you will need to ensure that you don't have a page break in the middle of a displayed formula. Often you'll simply have to think up something else to say to fill up the page, thus pushing the displayed formula entirely onto the next page. Try to think of this as a stimulus to research!"
A pen sometimes functions in the same way. And if I find it's results undesirable, then I'll try not to think of it as a problem to fix, and rather as looking for a new medium to explore.
If, for example, you can find a scientific study that demonstrates that people are more creative with a pen than a word processor, then I would be interested.
For me, one should strive for ideas that transcend the particulars of existing mediums. Such ideas are more likely to be influential in the long term.
For example, if writing by pen tends to force you to write a novel in a particular way that is undesirable, then fix the situation (e.g., use a word processor).
As a creative individual, you should be the one calling the shots.